• Sit on an Asan facing east.
• Wash Rudraksha with Punchagavya or Punchamrit.
• Then wash with water mixed with Ganges water.  
• Place Rudraksha in a plate with 9 leaves of Peepal tree . Place an empty plate in front of this plate for offerings.
• Chant 3 times "Om Namah Shivaya"
• Sprinkle water over ourself and all items of Puja chanting:
  
  "Om Apavitrah Pavitro Va Sarva Vastan Gatopi Va
  
  Yah Smaret Pundari Kaksham Sa Bahya Bhyantarah Shuchih"

Translation:

May all things unholy become holy, may all lower tendencies depart, just as soon as we transcend may within and without be purified!  

• Then Chant:
  
  "Om Gurubhyo Namaha
  
  Om Ganeshaya Namaha
  
  Om Kula Devatabhyo Namaha
  
  Om Ishta Devatabhyo Namaha
  
  Om Mata Pitribhyam Namaha “
  
  Translation:
  
  I bow to guru, I bow to Ganesha, I bow to the family deity, I bow to my personal deity, I bow to my parents.
  
• Place water on right hand with spoon of Achamani and sip after each of these 3 mantras
  
  "Om Keshavaya Namaha
  
  Om Narayana Namaha
  
  Om Madhavaya Namaha"
  
  Place water on right hand and pour on ground:
  
  "Om Govindaya Namaha" 
  
• Do three short rounds of pranayama breaths.
  
  "Om Pranavasya Parabrahma Rishihi Paramatma Devata
  
  Daivi Gayatri Chandaha
  
  Pranayamae Viniyogaha" 
  
• Sprinkle water on Rudraksha with Kusha grass from Achamani.
  
  Om Sadyojaatam Prapadyaami Sadyojataajava Namo Namaha
  
  Bhave Bhavenaati Bhave Bhavasvamaam Bhavodbhavay Namaha
    
• Take a flower and dip in Sandal paste and aromatic oils and touch on the beads.
  
  Om Vamdevaya Namah, Jyeshthaay Namah , Shreshthay Namah , Rudraay Namah , Kaalay Namah ,Kala Vikarannaay Namah, Bal Vikaranaay Namah, Balaay Namah Bala Pramathanaay Namah, Sarva Bhoot Damanaay Namah, Manomanaay Namah.
  
• Offer Dhoop to the rudraksha beads.
  
  "Om Aghorebhyo Ghorebhyo Ghor Ghor Tarebhayaha
  
  Sarvebhya Sarva Sharvvebhyo Namaste Astu Rudra Roopebhyaha"
  
• Again take a flower and dip in Sandal paste and touch on beads.
  
  "Om Tatpurushaaya Vidmahe Mahadevaay Dheemahi
  
  Tanno Rudraha Prachodayaat" .
  
• Chant Eeeshan mantra.
  
  Om Eeshaanah Sarvavidyaanam Eeshwar Sarvabhootaanaam
  
  Brahmaadipati Brahmanaadhipati Brahma Shivome Astu Sadaa Shivom.
  
• Chant Pranpratishtha mantra (Life giving mantra). Offer rice to plate before rudraksha while chanting this .
  
  Om aam hreem krom yum rum lum vum shum shum sum haum hum sah asya malaya prana eha prana
  
  Om aam hreem krom yum rum lum vum shum shum sum haum hum sah asya malaya jeeva eha sthitha
  
  Om aam hreem krom yum rum lum vum shum shum sum haum hum sah asya malaya sarveindrayani vagmansyachakshu shodragranapadani ihevagatya sukham chiram thithantu swaha.
  
• Chant these next mantras and give the offerings or give rice to the plate in front of Rudrakshas:
  
  (Offering ____ to the lotus feet of Shiva Maha Devaya, I bow)
  
  (Invocation) Avahanam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Seat) Asanam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Cloth) Vastram Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Sandalwood or scent) Chandanam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Rice) Akshatan Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Flower) Pushpam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Dhoop) Dhupam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Ghee lamp) Deepam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Water drink) Achamaniyam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Fruit) Naivedyam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha
  
  (Water Drink) Achamaniyam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha

Betel nut - Paan) Tambulam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha

(Coconut) Shri Phalam Samarpayami Sri Shiva Maha Devaya Charana Kamalebhyo Namaha  

Burn Camphor and circle it clockwise 3x in front of plate and chant:

Karpura Shivam Karuna Vataram Samsara Saram Bhujagendraharam

Sada Vasantam Hridaya Ravinde Bhavam Bhavani Sahitam Namami

Translation:

White as camphor and kindness incarnate, the very form of Brahman consciousness, you Shiva ever dwell in my heart. I bow to you 

Chant Gayatri mantra 3 times

Om Bhur Bhuvah Swaha

Om Tat Savitur Varenyum Bhargo Devasya Dhimahi Dhiyo Yonaha Prachodayat  

Chant Surya mantra 3 times

Om Bhu Om Bhuvaha Om Swaha Om Maha Om Janaha Om Tapaha Om Satyam 

Repeat and touch each after each mantra, right eye, left eye, forehead

Om Apo Jyothi

Raso Amtritam

Brahma Bhu Bhuvaha Swarom  

Chant Mahamrityunjaya mantra 5 times and offer rice to a plate before rudraksha after each round

Om Haum Joom Sah ,Om Bhur Bhuvaha Swaha

Om Triambakam Yajamahey,Sungandhim Pushti Vardanam

Urvar Ukamiva Bandhanan,Mrityor Muksheeya Mamritat

Om Swaha Bhuvaha Bhu Om Sah Joom Haum Om  

Chant Beeja mantra 9 times each

Om Namah Shivaya

Om Hreem Namah

Om Namah

Om Kleem Namah

Om Hreem Namah

Om Hreem Hum Namah

Om Hum Namah

Om Krom Srom Rom Namah  

Bow or supplicate, then chant this last prayer :

Om Purnamada purnamidam purnath purnamudyachite

Purnasya purnamadaya purna mevaya shishyate

Om Shanti Shanti Shanti